 BEAST |
BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC. | Github |
 BEAGLE |
BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages. | Github |
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HADES is a set of open source R packages for large scale analytics, including population characterization, population-level causal effect estimation, and patient-level prediction. | Github |